2FTM Hydrolase Hydrolase Inhibitor date Jan 24, 2006
title Crystal Structure Of Trypsin Complexed With The Bpti Variant >Gly)
authors W.M.Hanson, M.P.Horvath, D.P.Goldenberg
compound source
Molecule: Cationic Trypsin
Chain: A
Synonym: Beta-Trypsin
Ec: 3.4.21.4
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Pancreatic Trypsin Inhibitor
Chain: B
Synonym: Basic Protease Inhibitor, Bpi, Bpti, Aprotinin
Engineered: Yes
Mutation: Yes

Organism_scientific: Bos Taurus
Organism_taxid: 9913
Expression_system: Escherichia Coli
Expression_system_taxid: 634468
Expression_system_strain: Hb101
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pti103
symmetry Space Group: I 2 2 2
R_factor 0.207 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.591 81.736 123.595 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CA, EDO, IAS, NA, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceRigidification of a flexible protease inhibitor variant upon binding to trypsin., Hanson WM, Domek GJ, Horvath MP, Goldenberg DP, J Mol Biol. 2007 Feb 9;366(1):230-43. Epub 2006 Nov 7. PMID:17157870
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2ftm.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (2ftm.pdb2.gz) 201 Kb
  • Biological Unit Coordinates (2ftm.pdb3.gz) 101 Kb
  • Biological Unit Coordinates (2ftm.pdb4.gz) 102 Kb
  • Biological Unit Coordinates (2ftm.pdb5.gz) 102 Kb
  • Biological Unit Coordinates (2ftm.pdb6.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 2FTM
  • CSU: Contacts of Structural Units for 2FTM
  • Likely Quarternary Molecular Structure file(s) for 2FTM
  • Structure Factors (711 Kb)
  • Retrieve 2FTM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FTM from S2C, [Save to disk]
  • Re-refined 2ftm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FTM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FTM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FTM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ftm_B] [2ftm] [2ftm_A]
  • SWISS-PROT database: [P00974] [P00760]
  • Domain organization of [BPT1_BOVIN] [TRY1_BOVIN] by SWISSPFAM
  • Domains found in 2FTM: [KU] [Tryp_SPc ] by SMART
  • Other resources with information on 2FTM
  • Community annotation for 2FTM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science