2FU0 Structural Genomics, Unknown Function date Jan 25, 2006
title Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclospo Binding Domain
authors A.Dong, J.Lew, E.Sundararajan, Y.Zhao, G.Wasney, M.Vedadi, I.Koeie A.M.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, A.Bochkare T.Hills, Structural Genomics Consortium (Sgc)
compound source
Molecule: Cyclophilin, Putative
Chain: A
Fragment: Residues 589-747
Engineered: Yes
Organism_scientific: Plasmodium Falciparum
Organism_taxid: 36329
Strain: 3d7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codon Plus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28-Lic-Thrombin Derived From Pe
symmetry Space Group: P 1 21 1
R_factor 0.171 R_Free 0.221
length a length b length c angle alpha angle beta angle gamma
32.164 56.301 39.712 90.00 107.89 90.00
method X-Ray Diffractionresolution 1.80 Å
enzyme Isomerase E.C. BRENDA

Primary referenceGenome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms., Vedadi M, Lew J, Artz J, Amani M, Zhao Y, Dong A, Wasney GA, Gao M, Hills T, Brokx S, Qiu W, Sharma S, Diassiti A, Alam Z, Melone M, Mulichak A, Wernimont A, Bray J, Loppnau P, Plotnikova O, Newberry K, Sundararajan E, Houston S, Walker J, Tempel W, Bochkarev A, Kozieradzki I, Edwards A, Arrowsmith C, Roos D, Kain K, Hui R, Mol Biochem Parasitol. 2007 Jan;151(1):100-10. Epub 2006 Nov 13. PMID:17125854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (2fu0.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 2FU0
  • Likely Quarternary Molecular Structure file(s) for 2FU0
  • Structure Factors (83 Kb)
  • Retrieve 2FU0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FU0 from S2C, [Save to disk]
  • Re-refined 2fu0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FU0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FU0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FU0, from MSDmotif at EBI
  • Fold representative 2fu0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fu0_A] [2fu0]
  • SWISS-PROT database: [Q8I402]
  • Domain organization of [Q8I402_PLAF7] by SWISSPFAM
  • Other resources with information on 2FU0
  • Community annotation for 2FU0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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