2FUE Isomerase date Jan 26, 2006
title Human Alpha-Phosphomannomutase 1 With D-Mannose 1-Phosphate Cofactor Bound
authors N.R.Silvaggi, C.Zhang, Z.Lu, D.Dunaway-Mariano, K.N.Allen
compound source
Molecule: Phosphomannomutase 1
Chain: A
Synonym: Pmm 1, Pmmh-22
Ec: 5.4.2.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28b
symmetry Space Group: P 43 21 2
R_factor 0.202 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.390 51.390 214.603 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand M1P, MG, MSE enzyme Isomerase E.C.5.4.2.8 BRENDA
note 2FUE is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe X-ray crystal structures of human alpha-phosphomannomutase 1 reveal the structural basis of congenital disorder of glycosylation type 1a., Silvaggi NR, Zhang C, Lu Z, Dai J, Dunaway-Mariano D, Allen KN, J Biol Chem. 2006 May 26;281(21):14918-26. Epub 2006 Mar 15. PMID:16540464
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2fue.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 2FUE
  • CSU: Contacts of Structural Units for 2FUE
  • Likely Quarternary Molecular Structure file(s) for 2FUE
  • Structure Factors (201 Kb)
  • Retrieve 2FUE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FUE from S2C, [Save to disk]
  • Re-refined 2fue structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FUE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FUE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FUE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fue] [2fue_A]
  • SWISS-PROT database: [Q92871]
  • Domain organization of [PMM1_HUMAN] by SWISSPFAM
  • Other resources with information on 2FUE
  • Community annotation for 2FUE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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