2FX6 Hydrolase date Feb 03, 2006
title Bovine Trypsin Complexed With 2-Aminobenzamidazole
authors B.A.Katz
compound source
Molecule: Trypsin
Chain: A
Fragment: Cationic Trypsin, Residues 21-243
Synonym: Beta-Trypsin
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Other_details: Pancreas
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.710 63.200 69.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.57 Å
ligand 270, CA enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-guided design of Peptide-based tryptase inhibitors., McGrath ME, Sprengeler PA, Hirschbein B, Somoza JR, Lehoux I, Janc JW, Gjerstad E, Graupe M, Estiarte A, Venkataramani C, Liu Y, Yee R, Ho JD, Green MJ, Lee CS, Liu L, Tai V, Spencer J, Sperandio D, Katz BA, Biochemistry. 2006 May 16;45(19):5964-73. PMID:16681368
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (2fx6.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2FX6
  • CSU: Contacts of Structural Units for 2FX6
  • Likely Quarternary Molecular Structure file(s) for 2FX6
  • Structure Factors (235 Kb)
  • Retrieve 2FX6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FX6 from S2C, [Save to disk]
  • Re-refined 2fx6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FX6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FX6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2FX6, from MSDmotif at EBI
  • Fold representative 2fx6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fx6_A] [2fx6]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 2FX6: [Tryp_SPc ] by SMART
  • Other resources with information on 2FX6
  • Community annotation for 2FX6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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