2FYG	Viral Protein	date	Feb 07, 2006
title	Crystal Structure Of Nsp10 From Sars Coronavirus
authors	J.S.Joseph, K.S.Saikatendu, V.Subramanian, B.W.Neuman, A.Brooun, M.Griffith, K.Moy, M.K.Yadav, J.Velasquez, M.J.Buchmeier, R.C.St P.Kuhn
compound		source
Molecule: Replicase Polyprotein 1ab Chain: A Fragment: Residues 4240-4362 Engineered: Yes		Organism_scientific: Sars Coronavirus Organism_taxid: 227859 Strain: Tor-2 Gene: Orf1ab Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dl-41 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmh1-F
symmetry	Space Group: I 21 3	R_factor 0.196 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 108.874 108.874 108.874 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	GOL, ZN	enzyme
note	2FYG is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of nonstructural protein 10 from the severe acute respiratory syndrome coronavirus reveals a novel fold with two zinc-binding motifs., Joseph JS, Saikatendu KS, Subramanian V, Neuman BW, Brooun A, Griffith M, Moy K, Yadav MK, Velasquez J, Buchmeier MJ, Stevens RC, Kuhn P, J Virol. 2006 Aug;80(16):7894-901. PMID:16873246

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk] Biological Unit Coordinates (2fyg.pdb1.gz) 24 Kb LPC: Ligand-Protein Contacts for 2FYG CSU: Contacts of Structural Units for 2FYG Likely Quarternary Molecular Structure file(s) for 2FYG Structure Factors (311 Kb) Retrieve 2FYG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FYG from S2C, [Save to disk] Re-refined 2fyg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FYG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FYG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FYG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fyg] [2fyg_A] SWISS-PROT database: [P0C6X7] [P0C6U8] Domain organization of [R1AB_CVHSA] [R1A_CVHSA] by SWISSPFAM

Other resources with information on 2FYG

Community annotation for 2FYG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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