2FZP	Ligase	date	Feb 10, 2006
title	Crystal Structure Of The Usp8 Interaction Domain Of Human Nr
authors	J.R.Walker, G.V.Avvakumov, S.Xue, E.M.Newman, C.Butler-Cole, P.J. Jr., J.Weigelt, M.Sundstrom, C.Arrowsmith, A.Edwards, A.Bochkare Paganon, Structural Genomics Consortium (Sgc)
compound		source
Molecule: Ring Finger Protein 41 Isoform 1 Chain: A Fragment: Usp8 Interaction Domain Synonym: Nrdp1 Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rnf41 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Lic
symmetry	Space Group: P 21 21 21	R_factor 0.169 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.796 44.262 88.339 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.87 Å
ligand		enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Amino-terminal Dimerization, NRDP1-Rhodanese Interaction, and Inhibited Catalytic Domain Conformation of the Ubiquitin-specific Protease 8 (USP8)., Avvakumov GV, Walker JR, Xue S, Finerty PJ Jr, Mackenzie F, Newman EM, Dhe-Paganon S, J Biol Chem. 2006 Dec 8;281(49):38061-70. Epub 2006 Oct 11. PMID:17035239

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (2fzp.pdb1.gz) 25 Kb CSU: Contacts of Structural Units for 2FZP Likely Quarternary Molecular Structure file(s) for 2FZP Structure Factors (171 Kb) Retrieve 2FZP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FZP from S2C, [Save to disk] Re-refined 2fzp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FZP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FZP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FZP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fzp] [2fzp_A] SWISS-PROT database: [Q9H4P4] Domain organization of [RNF41_HUMAN] by SWISSPFAM

Other resources with information on 2FZP

Community annotation for 2FZP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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