2G0G	Transcription Activator	date	Feb 13, 2006
title	Structure-Based Drug Design Of A Novel Family Of Ppar Partia Agonists: Virtual Screening, X-Ray Crystallography And In V Vivo Biological Activities
authors	I.L.Lu, Y.H.Peng, C.F.Huang, Y.T.Lin, J.T.A.Hsu, S.Y.Wu
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain(Residues 207-477) Synonym: Ppar-Gamma Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p-1
symmetry	Space Group: P 1 21 1	R_factor 0.216 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.419 88.805 58.258 90.00 89.99 90.00
method	X-Ray Diffraction	resolution	2.54 Å
ligand	SP0 BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-based drug design of a novel family of PPARgamma partial agonists: virtual screening, X-ray crystallography, and in vitro/in vivo biological activities., Lu IL, Huang CF, Peng YH, Lin YT, Hsieh HP, Chen CT, Lien TW, Lee HJ, Mahindroo N, Prakash E, Yueh A, Chen HY, Goparaju CM, Chen X, Liao CC, Chao YS, Hsu JT, Wu SY, J Med Chem. 2006 May 4;49(9):2703-12. PMID:16640330

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (2g0g.pdb1.gz) 89 Kb LPC: Ligand-Protein Contacts for 2G0G CSU: Contacts of Structural Units for 2G0G Likely Quarternary Molecular Structure file(s) for 2G0G Structure Factors (173 Kb) Retrieve 2G0G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2G0G from S2C, [Save to disk] Re-refined 2g0g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2G0G in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2G0G

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2G0G, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2g0g_B] [2g0g_A] [2g0g] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 2G0G: [HOLI ] by SMART

Other resources with information on 2G0G

Community annotation for 2G0G at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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