2G19 Oxidoreductase date Feb 14, 2006
title Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-Induci Prolyl Hydroxylase (Phd2)
authors R.S.Syed, V.Li
compound source
Molecule: Egl Nine Homolog 1
Chain: A
Fragment: Catalytic Domain
Synonym: Hypoxia-Inducible Factor Prolyl Hydroxylase 2, Hif Hydroxylase 2, Hif-Ph2, Hph-2, Prolyl Hydroxylase Domain-Co Protein 2, Phd2, Sm-20;
Ec: 1.14.11.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 63
R_factor 0.216 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.851 110.851 40.379 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand 4HG, FE2 BindingDB enzyme Oxidoreductase E.C.1.14.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCellular oxygen sensing: Crystal structure of hypoxia-inducible factor prolyl hydroxylase (PHD2)., McDonough MA, Li V, Flashman E, Chowdhury R, Mohr C, Lienard BM, Zondlo J, Oldham NJ, Clifton IJ, Lewis J, McNeill LA, Kurzeja RJ, Hewitson KS, Yang E, Jordan S, Syed RS, Schofield CJ, Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9814-9. Epub 2006 Jun 16. PMID:16782814
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2g19.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2G19
  • CSU: Contacts of Structural Units for 2G19
  • Likely Quarternary Molecular Structure file(s) for 2G19
  • Retrieve 2G19 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G19 from S2C, [Save to disk]
  • View 2G19 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G19
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G19, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g19] [2g19_A]
  • SWISS-PROT database: [Q9GZT9]
  • Domain organization of [EGLN1_HUMAN] by SWISSPFAM
  • Domain found in 2G19: [P4Hc ] by SMART
  • Other resources with information on 2G19
  • Community annotation for 2G19 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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