2G2U Hydrolase Hydrolase Inhibitor date Feb 16, 2006
title Crystal Structure Of The Shv-1 Beta-Lactamasebeta-Lactamase Protein (Blip) Complex
authors K.A.Reynolds, J.M.Thomson, K.D.Corbett, C.R.Bethel, J.M.Berger, J.F.Kirsch, R.A.Bonomo, T.M.Handel
compound source
Molecule: Beta-Lactamase Shv-1
Chain: A
Synonym: Pit-2
Ec: 3.5.2.6
Engineered: Yes
Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
Gene: Bla, Shv1
Expression_system: Escherichia Coli Str. K-12 Substr. Dh10b
Expression_system_taxid: 316385
Expression_system_strain: Dh10b
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbcsk(-)

Molecule: Beta-Lactamase Inhibitory Protein
Chain: B
Synonym: Blip
Engineered: Yes

Organism_scientific: Streptomyces Clavuligerus
Organism_taxid: 1901
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b
symmetry Space Group: P 63
R_factor 0.173 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.871 127.871 73.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand
enzyme Hydrolase E.C.3.5.2.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural and Computational Characterization of the SHV-1 beta-Lactamase-beta-Lactamase Inhibitor Protein Interface., Reynolds KA, Thomson JM, Corbett KD, Bethel CR, Berger JM, Kirsch JF, Bonomo RA, Handel TM, J Biol Chem. 2006 Sep 8;281(36):26745-53. Epub 2006 Jun 29. PMID:16809340
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (2g2u.pdb1.gz) 70 Kb
  • CSU: Contacts of Structural Units for 2G2U
  • Likely Quarternary Molecular Structure file(s) for 2G2U
  • Structure Factors (892 Kb)
  • Retrieve 2G2U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G2U from S2C, [Save to disk]
  • Re-refined 2g2u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2G2U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G2U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G2U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g2u_A] [2g2u] [2g2u_B]
  • SWISS-PROT database: [P0AD64] [P35804]
  • Domain organization of [BLA1_KLEPN] [BLIP_STRCL] by SWISSPFAM
  • Other resources with information on 2G2U
  • Community annotation for 2G2U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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