2G45 Hydrolase date Feb 21, 2006
title Co-Crystal Structure Of Znf Ubp Domain From The Deubiquitina Enzyme Isopeptidase T (Isot) In Complex With Ubiquitin
authors F.E.Reyes-Turcu, J.R.Horton, J.E.Mullally, A.Heroux, X.Cheng, K.D.Wilkinson
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 5
Chain: A, D
Fragment: The Znf Ubp Domain Of Isot (Residues 163-291)
Synonym: Ubiquitin Thiolesterase 5, Ubiquitin-Specific Proc Protease 5, Deubiquitinating Enzyme 5, Isopeptidase T;
Ec: 3.1.2.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Usp5, Isot
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Prset B (Invitrogen)

Molecule: Ubiquitin
Chain: B, E
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 64
R_factor 0.229 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.074 68.074 225.345 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.99 Å
ligand CL, ZN enzyme Hydrolase E.C.3.1.2.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceThe Ubiquitin Binding Domain ZnF UBP Recognizes the C-Terminal Diglycine Motif of Unanchored Ubiquitin., Reyes-Turcu FE, Horton JR, Mullally JE, Heroux A, Cheng X, Wilkinson KD, Cell. 2006 Mar 24;124(6):1197-208. PMID:16564012
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (2g45.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (2g45.pdb2.gz) 34 Kb
  • Biological Unit Coordinates (2g45.pdb3.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2G45
  • CSU: Contacts of Structural Units for 2G45
  • Likely Quarternary Molecular Structure file(s) for 2G45
  • Retrieve 2G45 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G45 from S2C, [Save to disk]
  • View 2G45 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G45
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G45, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g45_A] [2g45_E] [2g45] [2g45_B] [2g45_D]
  • SWISS-PROT database: [P62988] [P45974]
  • Domain organization of [UBIQ_HUMAN] [UBP5_HUMAN] by SWISSPFAM
  • Domains found in 2G45: [UBQ] [ZnF_UBP ] by SMART
  • Other resources with information on 2G45
  • Community annotation for 2G45 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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