2G4Z Hydrolase date Feb 22, 2006
title Anomalous Substructure Of Thermolysin
authors C.Mueller-Dieckmann, M.S.Weiss
compound source
Molecule: Thermolysin
Chain: A
Synonym: Thermostable Neutral Proteinase
Ec: 3.4.24.27
Organism_scientific: Bacillus Thermoproteolyticus
Organism_taxid: 1427
symmetry Space Group: P 61 2 2
R_factor 0.190 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.487 92.487 127.529 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.98 Å
ligand CA, CL, SO4, ZN enzyme Hydrolase E.C.3.4.24.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOn the routine use of soft X-rays in macromolecular crystallography. Part IV. Efficient determination of anomalous substructures in biomacromolecules using longer X-ray wavelengths., Mueller-Dieckmann C, Panjikar S, Schmidt A, Mueller S, Kuper J, Geerlof A, Wilmanns M, Singh RK, Tucker PA, Weiss MS, Acta Crystallogr D Biol Crystallogr. 2007 Mar;63(Pt 3):366-80. Epub 2007, Feb 21. PMID:17327674
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2g4z.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2G4Z
  • CSU: Contacts of Structural Units for 2G4Z
  • Likely Quarternary Molecular Structure file(s) for 2G4Z
  • Structure Factors (245 Kb)
  • Retrieve 2G4Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G4Z from S2C, [Save to disk]
  • Re-refined 2g4z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2G4Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G4Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G4Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g4z_A] [2g4z]
  • SWISS-PROT database: [P00800]
  • Domain organization of [THER_BACTH] by SWISSPFAM
  • Other resources with information on 2G4Z
  • Community annotation for 2G4Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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