2G9B Metal Binding Protein date Mar 06, 2006
title Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
authors D.J.Kojetin, R.A.Venters, D.R.Kordys, R.J.Thompson, R.Kumar, J.Ca
compound source
Molecule: Calbindin
Chain: A
Synonym: Vitamin D-Dependent Calcium-Binding Protein, Avian Calbindin D28, D-28k, Spot 35 Protein;
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Calb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • calcium ion binding involved...


    • Primary referenceStructure, binding interface and hydrophobic transitions of Ca(2+)-loaded calbindin-D(28K)., Kojetin DJ, Venters RA, Kordys DR, Thompson RJ, Kumar R, Cavanagh J, Nat Struct Mol Biol. 2006 Jun 25;. PMID:16799559
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (701 Kb) [Save to disk]
  • Biological Unit Coordinates (2g9b.pdb1.gz) 69 Kb
  • CSU: Contacts of Structural Units for 2G9B
  • Retrieve 2G9B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G9B from S2C, [Save to disk]
    • View 2G9B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2G9B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G9B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g9b] [2g9b_A]
  • SWISS-PROT database: [P07171]
  • Domain organization of [CALB1_RAT] by SWISSPFAM
  • Domain found in 2G9B: [EFh ] by SMART
    • Other resources with information on 2G9B
  • Community annotation for 2G9B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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