2GBN	Protein Binding	date	Mar 10, 2006
title	Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of
authors	D.M.Ferraro, D.J.Ferraro, S.Ramaswamy, A.D.Robertson
compound		source
Molecule: Ubiquitin Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prs
symmetry	Space Group: P 65 2 2	R_factor 0.203 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.773 45.773 111.549 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.60 Å
Primary reference	Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis., Ferraro DM, Ferraro DJ, Ramaswamy S, Robertson AD, J Mol Biol. 2006 Jun 2;359(2):390-402. Epub 2006 Apr 5. PMID:16647719

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk] Biological Unit Coordinates (2gbn.pdb1.gz) 27 Kb CSU: Contacts of Structural Units for 2GBN Likely Quarternary Molecular Structure file(s) for 2GBN Structure Factors (66 Kb) Retrieve 2GBN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GBN from S2C, [Save to disk] Re-refined 2gbn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GBN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GBN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GBN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gbn_A] [2gbn] SWISS-PROT database: [P62988] Domain organization of [UBIQ_HUMAN] by SWISSPFAM Domain found in 2GBN: [UBQ ] by SMART

Other resources with information on 2GBN

Community annotation for 2GBN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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