2GC2 Isomerase date Mar 13, 2006
title The Crystal Structure Of Phosphoglucose Isomerase From Pyroc Furiosus In Complex With Fructose 6-Phosphate And Zinc
authors J.M.Berrisford, D.W.Rice, P.J.Baker
compound source
Molecule: Glucose-6-Phosphate Isomerase
Chain: A, B
Synonym: Gpi, Phosphoglucose Isomerase, Pgi, Phosphohexose Phi;
Ec: 5.3.1.9
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Gene: Pgia
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pluw557
symmetry Space Group: P 21 21 21
R_factor 0.172 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.067 73.945 74.392 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand F6R, ZN enzyme Isomerase E.C.5.3.1.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEvidence Supporting a cis-enediol-based Mechanism for Pyrococcus furiosus Phosphoglucose Isomerase., Berrisford JM, Hounslow AM, Akerboom J, Hagen WR, Brouns SJ, van der Oost J, Murray IA, Michael Blackburn G, Waltho JP, Rice DW, Baker PJ, J Mol Biol. 2006 Mar 24;. PMID:16580686
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (2gc2.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 2GC2
  • CSU: Contacts of Structural Units for 2GC2
  • Likely Quarternary Molecular Structure file(s) for 2GC2
  • Structure Factors (174 Kb)
  • Retrieve 2GC2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GC2 from S2C, [Save to disk]
  • Re-refined 2gc2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GC2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GC2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GC2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j2gc2, region C:159-312 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gc2] [2gc2_A] [2gc2_B]
  • SWISS-PROT database: [P83194]
  • Domain organization of [G6PI_PYRFU] by SWISSPFAM
  • Other resources with information on 2GC2
  • Community annotation for 2GC2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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