2GCU	Hydrolase	date	Mar 14, 2006
title	X-Ray Structure Of Gene Product From Arabidopsis Thaliana At
authors	J.G.Mccoy, G.E.Wesenberg, G.N.Phillips Jr., E.Bitto, C.A.Bingman For Eukaryotic Structural Genomics (Cesg)
compound		source
Molecule: Putative Hydroxyacylglutathione Hydrolase 3 Chain: A, B, C, D Synonym: Glyoxalase II, Glx II Ec: 3.1.2.6 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Gene: At1g53580 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 1 21 1	R_factor 0.177 R_Free 0.204
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.607 64.469 127.877 90.00 97.83 90.00
method	X-Ray Diffraction	resolution	1.48 Å
ligand	CSD, EDO, FE2, SO4	enzyme	Hydrolase E.C.3.1.2.6 BRENDA
Primary reference	Structure of an ETHE1-like protein from Arabidopsis thaliana., McCoy JG, Bingman CA, Bitto E, Holdorf MM, Makaroff CA, Phillips GN Jr, Acta Crystallogr D Biol Crystallogr. 2006 Sep;62(Pt 9):964-70. Epub 2006, Aug 19. PMID:16929096

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk] Biological Unit Coordinates (2gcu.pdb1.gz) 89 Kb Biological Unit Coordinates (2gcu.pdb2.gz) 89 Kb LPC: Ligand-Protein Contacts for 2GCU CSU: Contacts of Structural Units for 2GCU Likely Quarternary Molecular Structure file(s) for 2GCU Structure Factors (4504 Kb) Retrieve 2GCU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GCU from S2C, [Save to disk] Re-refined 2gcu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GCU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GCU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GCU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gcu_D] [2gcu] [2gcu_C] [2gcu_B] [2gcu_A] SWISS-PROT database: [Q9C8L4] Domain organization of [GLO2O_ARATH] by SWISSPFAM Domain found in 2GCU: [Lactamase_B ] by SMART

Other resources with information on 2GCU

Community annotation for 2GCU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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