2GD5	Protein Transport	date	Mar 15, 2006
title	Structural Basis For Budding By The Escrtiii Factor Chmp3
authors	T.M.Muziol, E.Pineda-Molina, R.B.Ravelli, A.Zamborlini, Y.Usami, H.Gottlinger, W.Weissenhorn
compound		source
Molecule: Charged Multivesicular Body Protein 3 Chain: A, B, C, D Synonym: Chromatin-Modifying Protein 3, Vacuolar Protein So Hvps24, Neuroendocrine Differentiation Factor; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Chmp3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl 21 Codon + Expression_system_vector_type: Plasmid Expression_system_plasmid: Pproexhtb
symmetry	Space Group: P 1	R_factor 0.259 R_Free 0.301
crystal cell	length a length b length c angle alpha angle beta angle gamma 33.580 72.570 89.230 68.68 83.61 76.70
method	X-Ray Diffraction	resolution	2.80 Å
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural Basis for Budding by the ESCRT-III Factor CHMP3., Muziol T, Pineda-Molina E, Ravelli RB, Zamborlini A, Usami Y, Gottlinger H, Weissenhorn W, Dev Cell. 2006 Jun;10(6):821-30. PMID:16740483

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk] Biological Unit Coordinates (2gd5.pdb1.gz) 49 Kb Biological Unit Coordinates (2gd5.pdb2.gz) 49 Kb LPC: Ligand-Protein Contacts for 2GD5 CSU: Contacts of Structural Units for 2GD5 Likely Quarternary Molecular Structure file(s) for 2GD5 Structure Factors (129 Kb) Retrieve 2GD5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GD5 from S2C, [Save to disk] Re-refined 2gd5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GD5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GD5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GD5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gd5_A] [2gd5_B] [2gd5] [2gd5_C] [2gd5_D] SWISS-PROT database: [Q9Y3E7] Domain organization of [CHMP3_HUMAN] by SWISSPFAM

Other resources with information on 2GD5

Community annotation for 2GD5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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