2GDX Ligase Transport Protein date Mar 17, 2006
title Solution Structure Of The B. Brevis Tycc3-Pcp In H-State
authors A.Koglin, F.Loehr, V.V.Rogov, M.A.Marahiel, F.Bernhard, V.Doetsch
compound source
Molecule: Tyrocidine Synthetase III
Chain: A
Fragment: Acyl Carrier 3, Tycc3 Thioester Domain
Synonym: Non-Ribosomal Peptide Synthetase Peptidyl Carrier
Engineered: Yes
Mutation: Yes
 Organism_scientific: Brevibacillus Parabrevis
Organism_taxid: 54914
Strain: Atcc8185
Gene: Tycc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl10
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe70
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConformational switches modulate protein interactions in peptide antibiotic synthetases., Koglin A, Mofid MR, Lohr F, Schafer B, Rogov VV, Blum MM, Mittag T, Marahiel MA, Bernhard F, Dotsch V, Science. 2006 Apr 14;312(5771):273-6. PMID:16614225
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (401 Kb) [Save to disk]
  • Biological Unit Coordinates (2gdx.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 2GDX
  • Retrieve 2GDX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GDX from S2C, [Save to disk]
    • View 2GDX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GDX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GDX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gdx] [2gdx_A]
  • SWISS-PROT database: [O30409]
  • Domain organization of [TYCC_BREPA] by SWISSPFAM
    • Other resources with information on 2GDX
  • Community annotation for 2GDX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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