2GHE	Oxidoreductase	date	Mar 27, 2006
title	Conformational Mobility In The Active Site Of A Heme Peroxid
authors	S.K.Badyal, M.G.Joyce, K.H.Sharp, E.L.Raven, P.C.E.Moody
compound		source
Molecule: Cytosolic Ascorbate Peroxidase 1 Chain: X Ec: 1.11.1.11 Engineered: Yes Mutation: Yes		Organism_scientific: Glycine Max Organism_common: Soybean Organism_taxid: 3847 Gene: Ascorbate Peroxidase Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: P 42 21 2	R_factor 0.180 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.003 82.003 75.012 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.75 Å
ligand	HEM, NA	enzyme	Oxidoreductase E.C.1.11.1.11 BRENDA
Gene Ontology	Chain Function Process Component X peroxidase activity L-ascorbate peroxidase activ...
Primary reference	Conformational mobility in the active site of a heme peroxidase., Badyal SK, Joyce MG, Sharp KH, Seward HE, Mewies M, Basran J, Macdonald IK, Moody PC, Raven EL, J Biol Chem. 2006 Aug 25;281(34):24512-20. Epub 2006 Jun 7. PMID:16762924

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (2ghe.pdb1.gz) 86 Kb LPC: Ligand-Protein Contacts for 2GHE CSU: Contacts of Structural Units for 2GHE Likely Quarternary Molecular Structure file(s) for 2GHE Structure Factors (380 Kb) Retrieve 2GHE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GHE from S2C, [Save to disk] Re-refined 2ghe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GHE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GHE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GHE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ghe_X] [2ghe] SWISS-PROT database: [Q43758] Domain organization of [Q43758_SOYBN] by SWISSPFAM

Other resources with information on 2GHE

Community annotation for 2GHE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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