2GIP Rna date Mar 29, 2006
title Solution Structure Of A Portion Of The 5'Utr Of Hspa Mrna Fr Bradyrhizobium Janponicum Having Deleted G83
authors S.Chowdhury, C.Maris, F.H.Allain, F.Narberhaus
compound source
Molecule: 28-Mer
Chain: A
Engineered: Yes
Mutation: Yes
Other_details: Delg83 Microrose Rna
 Synthetic: Yes
Other_details: The Sequence For This Rna Naturally Occurs I Bradyrhizobium Japonicum.
methodSolution NMR
Primary referenceMolecular basis for temperature sensing by an RNA thermometer., Chowdhury S, Maris C, Allain FH, Narberhaus F, EMBO J. 2006 Jun 7;25(11):2487-97. Epub 2006 May 18. PMID:16710302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (295 Kb) [Save to disk]
  • Biological Unit Coordinates (2gip.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 2GIP
  • Original NMR restraints for 2GIP from PDB
  • Retrieve 2GIP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GIP from S2C, [Save to disk]
    • View 2GIP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GIP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GIP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gip] [2gip_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2GIP
  • Community annotation for 2GIP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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