2GJS Signaling Protein date Mar 31, 2006
title The Crystal Structure Of Human Rrad In Complex With Gdp
authors A.P.Turnbull, X.Yang, M.Soundararajan, G.Schoch, J.Debreczeni, J. C.Gileadi, G.Berridge, N.Pantic, N.Burgess, C.E.A.Smee, J.Bray, F Delft, J.Weigelt, A.Edwards, C.Arrowsmith, M.Sundstrom, D.Doyle, Structural Genomics Consortium (Sgc)
compound source
Molecule: Gtp-Binding Protein Rad
Chain: A, B
Synonym: Ras Associated With Diabetes, Rad1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rrad
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 1 21 1
R_factor 0.195 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.427 58.560 53.603 90.00 97.18 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GDP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (2gjs.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (2gjs.pdb2.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 2GJS
  • CSU: Contacts of Structural Units for 2GJS
  • Likely Quarternary Molecular Structure file(s) for 2GJS
  • Structure Factors (353 Kb)
  • Retrieve 2GJS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GJS from S2C, [Save to disk]
  • Re-refined 2gjs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GJS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GJS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GJS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gjs_B] [2gjs] [2gjs_A]
  • SWISS-PROT database: [P55042]
  • Domain organization of [RAD_HUMAN] by SWISSPFAM
  • Domain found in 2GJS: [small_GTPase ] by SMART
    • Other resources with information on 2GJS
  • Community annotation for 2GJS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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