2GMD Antimicrobial Protein date Apr 06, 2006
title Structure Of C12-Lf11 Bound To The Sds Micelles
authors B.Japelj
compound source
Molecule: Lactoferrin-Based Synthetic Peptide C12-Lf11
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
methodSolution NMR
ligand DAO, NH2 enzyme
Primary referenceThe acyl group as the central element of the structural organization of antimicrobial lipopeptide., Japelj B, Zorko M, Majerle A, Pristovsek P, Sanchez-Gomez S, Tejada GM, Moriyon I, Blondelle SE, Brandenburg K, Andra J, Lohner K, Jerala R, J Am Chem Soc. 2007 Feb 7;129(5):1022-3. PMID:17263370
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (2gmd.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 2GMD
  • CSU: Contacts of Structural Units for 2GMD
  • Original NMR restraints for 2GMD from PDB
  • Retrieve 2GMD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GMD from S2C, [Save to disk]
  • View 2GMD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GMD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GMD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gmd_A] [2gmd]
  • SWISS-PROT database: [Q9UCY5]
  • Domain organization of [Q9UCY5_HUMAN] by SWISSPFAM
  • Other resources with information on 2GMD
  • Community annotation for 2GMD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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