2GTC Structural Genomics, Unknown Function date Apr 27, 2006
title Crystal Structure Of The Hypthetical Protein From Bacillus C (Atcc 14579). Northeast Structural Genomics Target Bcr11
authors J.Seetharaman, M.Abashidze, F.Forouhar, K.Conover, B.Cooper, L.C R.Xiao, T.B.Acton, L.Tong, J.F.Hunt, Northeast Structural Genom Consortium (Nesg)
compound source
Molecule: Upf0145 Protein Bc_1816
Chain: A, B, C, D, E
Engineered: Yes
 Organism_scientific: Bacillus Cereus Atcc 14579
Organism_taxid: 226900
Strain: Atcc 14579 Dsm 31
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 21
symmetry Space Group: C 1 2 1
R_factor 0.236 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.065 54.609 96.354 90.00 118.23 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (2gtc.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 2GTC
  • CSU: Contacts of Structural Units for 2GTC
  • Likely Quarternary Molecular Structure file(s) for 2GTC
  • Structure Factors (211 Kb)
  • Retrieve 2GTC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GTC from S2C, [Save to disk]
  • Re-refined 2gtc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GTC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GTC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GTC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gtc_A] [2gtc_D] [2gtc] [2gtc_B] [2gtc_E] [2gtc_C]
  • SWISS-PROT database: [Q63F05]
  • Domain organization of [Y904_BACCZ] by SWISSPFAM
    • Other resources with information on 2GTC
  • Community annotation for 2GTC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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