2GTH Viral Protein date Apr 28, 2006
title Crystal Structure Of The Wildtype Mhv Coronavirus Non-Struct Protein Nsp15
authors X.Xu, Y.Zhai, F.Sun, Z.Lou, D.Su, Z.Rao
compound source
Molecule: Replicase Polyprotein 1ab
Chain: A
Fragment: P35(Residues 1-369)
Synonym: Pp1ab, Orf1ab Polyprotein, Non-Structural Protein
Engineered: Yes
Organism_scientific: Murine Hepatitis Virus
Organism_taxid: 11142
Strain: A59
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1
symmetry Space Group: P 63 2 2
R_factor 0.195 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.435 86.435 219.220 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
Primary referenceNew antiviral target revealed by the hexameric structure of mouse hepatitis virus nonstructural protein nsp15., Xu X, Zhai Y, Sun F, Lou Z, Su D, Xu Y, Zhang R, Joachimiak A, Zhang XC, Bartlam M, Rao Z, J Virol. 2006 Aug;80(16):7909-17. PMID:16873248
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2gth.pdb1.gz) 352 Kb
  • CSU: Contacts of Structural Units for 2GTH
  • Likely Quarternary Molecular Structure file(s) for 2GTH
  • Structure Factors (137 Kb)
  • Retrieve 2GTH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GTH from S2C, [Save to disk]
  • Re-refined 2gth structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GTH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GTH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GTH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gth_A] [2gth]
  • SWISS-PROT database: [Q9J3E8] [P0C6X9]
  • Domain organization of [Q9J3E8_9BETC] [R1AB_CVMA5] by SWISSPFAM
  • Other resources with information on 2GTH
  • Community annotation for 2GTH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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