2GVE Isomerase date May 02, 2006
title Time-Of-Flight Neutron Diffraction Structure Of D-Xylose Iso
authors A.K.Katz, X.Li, H.L.Carrell, B.L.Hanson, P.Langan, L.Coates, B.P.Schoenborn, J.P.Glusker, G.J.Bunick
compound source
Molecule: Xylose Isomerase
Chain: A
Ec: 5.3.1.5
 Organism_scientific: Streptomyces Rubiginosus
Organism_taxid: 1929
symmetry Space Group: I 2 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.880 99.680 102.900 90.00 90.00 90.00
method Neutron Diffractionresolution 2.20 Å
ligand CO enzyme Isomerase E.C.5.3.1.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLocating active-site hydrogen atoms in D-xylose isomerase: Time-of-flight neutron diffraction., Katz AK, Li X, Carrell HL, Hanson BL, Langan P, Coates L, Schoenborn BP, Glusker JP, Bunick GJ, Proc Natl Acad Sci U S A. 2006 May 30;103(22):8342-7. Epub 2006 May 17. PMID:16707576
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (2gve.pdb1.gz) 580 Kb
  • LPC: Ligand-Protein Contacts for 2GVE
  • CSU: Contacts of Structural Units for 2GVE
  • Likely Quarternary Molecular Structure file(s) for 2GVE
  • Structure Factors (293 Kb)
  • Retrieve 2GVE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GVE from S2C, [Save to disk]
    • View 2GVE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GVE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GVE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gve] [2gve_A]
  • SWISS-PROT database: [P24300]
  • Domain organization of [XYLA_STRRU] by SWISSPFAM
    • Other resources with information on 2GVE
  • Community annotation for 2GVE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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