2GWO Hydrolase date May 05, 2006
title Crystal Structure Of Tmdp
authors S.J.Kim, S.E.Ryu, J.H.Kim
compound source
Molecule: Dual Specificity Protein Phosphatase 13
Chain: A, B, C, D
Synonym: Testis- And Skeletal-Muscle-Specific Dsp, Dual Spe Phosphatase Skrp4, Tmdp;
Ec: 3.1.3.48, 3.1.3.16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dusp13, Tmdp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.198 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.586 72.240 89.896 90.00 99.66 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • protein tyrosine phosphatase...


  • Primary referenceCrystal structure of human TMDP, a testis-specific dual specificity protein phosphatase: implications for substrate specificity., Kim SJ, Jeong DG, Yoon TS, Son JH, Cho SK, Ryu SE, Kim JH, Proteins. 2007 Jan 1;66(1):239-45. PMID:17044055
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (2gwo.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (2gwo.pdb2.gz) 28 Kb
  • Biological Unit Coordinates (2gwo.pdb3.gz) 30 Kb
  • Biological Unit Coordinates (2gwo.pdb4.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2GWO
  • Likely Quarternary Molecular Structure file(s) for 2GWO
  • Structure Factors (231 Kb)
  • Retrieve 2GWO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GWO from S2C, [Save to disk]
  • Re-refined 2gwo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GWO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GWO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GWO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gwo_C] [2gwo_A] [2gwo_D] [2gwo_B] [2gwo]
  • SWISS-PROT database: [Q9UII6]
  • Domain organization of [DUS13_HUMAN] by SWISSPFAM
  • Domain found in 2GWO: [DSPc ] by SMART
  • Other resources with information on 2GWO
  • Community annotation for 2GWO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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