2GZD	Protein Transport	date	May 11, 2006
title	Crystal Structure Of Rab11 In Complex With Rab11-Fip2
authors	A.R.Khan
compound		source
Molecule: Ras-Related Protein Rab-11a Chain: A, B Fragment: G Protein Domain Synonym: Rab-11, Yl8 Ec: 3.6.5.2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab11a Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-28b
Molecule: Rab11 Family-Interacting Protein 2 Chain: C, D Fragment: Rab11-Fip2 Rab-Binding Domain Synonym: Rab11-Fip2, Nrip11 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmal-C2x
symmetry	Space Group: P 21 21 21	R_factor 0.226 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.364 91.149 113.099 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.44 Å
ligand	GTP, MG, MSE	enzyme	Hydrolase E.C.3.6.5.2 BRENDA
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Crystal structure of rab11 in complex with rab11 family interacting protein 2., Jagoe WN, Lindsay AJ, Read RJ, McCoy AJ, McCaffrey MW, Khan AR, Structure. 2006 Aug;14(8):1273-83. PMID:16905101

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (2gzd.pdb1.gz) 68 Kb LPC: Ligand-Protein Contacts for 2GZD CSU: Contacts of Structural Units for 2GZD Likely Quarternary Molecular Structure file(s) for 2GZD Structure Factors (377 Kb) Retrieve 2GZD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GZD from S2C, [Save to disk] Re-refined 2gzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GZD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GZD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GZD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gzd_C] [2gzd] [2gzd_B] [2gzd_D] [2gzd_A] SWISS-PROT database: [P62491] [Q7L804] Domain organization of [RB11A_HUMAN] [RFIP2_HUMAN] by SWISSPFAM Domain found in 2GZD: [RAB ] by SMART

Other resources with information on 2GZD

Community annotation for 2GZD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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