2H15 Lyase date May 16, 2006
title Carbonic Anhydrase Inhibitors: Clashing With Ala65 As A Mean Designing Isozyme-Selective Inhibitors That Show Low Affini Ubiquitous Isozyme II
authors J.Y.Winum, C.Temperini, S.Ciattini, A.Scozzafava, C.T.Supuran
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonic Anhydrase II, Carbonate Dehydratase II, C Carbonic Anhydrase C;
Ec: 4.2.1.1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.186 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.150 41.550 72.250 90.00 104.23 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand B19, HG, ZN BindingDB enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCarbonic anhydrase inhibitors: clash with Ala65 as a means for designing inhibitors with low affinity for the ubiquitous isozyme II, exemplified by the crystal structure of the topiramate sulfamide analogue., Winum JY, Temperini C, El Cheikh K, Innocenti A, Vullo D, Ciattini S, Montero JL, Scozzafava A, Supuran CT, J Med Chem. 2006 Nov 30;49(24):7024-31. PMID:17125255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2h15.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2H15
  • CSU: Contacts of Structural Units for 2H15
  • Likely Quarternary Molecular Structure file(s) for 2H15
  • Structure Factors (208 Kb)
  • Retrieve 2H15 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H15 from S2C, [Save to disk]
  • Re-refined 2h15 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H15 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H15
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H15, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h15] [2h15_A]
  • SWISS-PROT database: [P00918]
  • Domain organization of [CAH2_HUMAN] by SWISSPFAM
  • Domain found in 2H15: [Carb_anhydrase ] by SMART
  • Other resources with information on 2H15
  • Community annotation for 2H15 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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