2H3K Protein Binding date May 22, 2006
title Solution Structure Of The First Neat Domain Of Isdh
authors R.M.Pilpa, E.A.Fadeev, V.A.Villareal, M.A.Wong, M.Phillips, R.T.C
compound source
Molecule: Haptoglobin-Binding Surface Anchored Protein
Chain: A
Fragment: First Neat Domain, Isdh-N1
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus Subsp. Aureus
Organism_taxid: 282459
Strain: Mssa476
Gene: Sa1552
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
methodSolution NMR
Primary referenceSolution structure of the NEAT (NEAr Transporter) domain from IsdH/HarA: the human hemoglobin receptor in Staphylococcus aureus., Pilpa RM, Fadeev EA, Villareal VA, Wong ML, Phillips M, Clubb RT, J Mol Biol. 2006 Jul 7;360(2):435-47. Epub 2006 May 22. PMID:16762363
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (753 Kb) [Save to disk]
  • Biological Unit Coordinates (2h3k.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 2H3K
  • Original NMR restraints for 2H3K from PDB
  • Retrieve 2H3K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H3K from S2C, [Save to disk]
    • View 2H3K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2H3K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H3K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h3k] [2h3k_A]
  • SWISS-PROT database: [Q6G8J7]
  • Domain organization of [ISDH_STAAS] by SWISSPFAM
  • Domain found in 2H3K: [NEAT ] by SMART
    • Other resources with information on 2H3K
  • Community annotation for 2H3K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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