2H46 Hormone Growth Factor date May 23, 2006
title Native Domain-Swapped Dimer Crystal Structure Of The Grb2 Sh
authors A.P.Benfield, S.F.Martin, B.B.Whiddon
compound source
Molecule: Growth Receptor Binding Protein 2
Chain: E
Fragment: Sh2 Domain
Synonym: Grb2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grb2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4 2 2
R_factor 0.222 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.783 80.783 75.216 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand GOL enzyme
Primary referenceStructural and energetic aspects of Grb2-SH2 domain-swapping., Benfield AP, Whiddon BB, Clements JH, Martin SF, Arch Biochem Biophys. 2007 Jun 1;462(1):47-53. Epub 2007 Apr 2. PMID:17466257
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (2h46.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (2h46.pdb2.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 2H46
  • CSU: Contacts of Structural Units for 2H46
  • Likely Quarternary Molecular Structure file(s) for 2H46
  • Structure Factors (73 Kb)
  • Retrieve 2H46 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H46 from S2C, [Save to disk]
  • Re-refined 2h46 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2H46 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2H46
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H46, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h46] [2h46_E]
  • SWISS-PROT database: [P62993]
  • Domain organization of [GRB2_HUMAN] by SWISSPFAM
  • Domain found in 2H46: [SH2 ] by SMART
    • Other resources with information on 2H46
  • Community annotation for 2H46 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science