2H6K	Gene Regulation	date	May 31, 2006
title	Histone H3 Recognition And Presentation By The Wdr5 Module O Complex
authors	A.J.Ruthenburg, W.K.Wang, D.M.Graybosch, H.Li, C.D.Allis, D.J.Pa G.L.Verdine
compound		source
Molecule: Wd-Repeat Protein 5 Chain: A, B Fragment: Residues 23-334 Synonym: Bmp2-Induced 3-Kb Gene Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wdr5, Big3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmcsg7
Molecule: Histone H3 K4-Me 9-Residue Peptide Chain: C, D Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized Using Phase Synthesis
symmetry	Space Group: C 1 2 1	R_factor 0.146 R_Free 0.190
crystal cell	length a length b length c angle alpha angle beta angle gamma 133.473 46.521 112.110 90.00 116.86 90.00
method	X-Ray Diffraction	resolution	1.89 Å
ligand	MLZ	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Histone H3 recognition and presentation by the WDR5 module of the MLL1 complex., Ruthenburg AJ, Wang W, Graybosch DM, Li H, Allis CD, Patel DJ, Verdine GL, Nat Struct Mol Biol. 2006 Aug;13(8):704-12. Epub 2006 Jul 9. PMID:16829959

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk] Biological Unit Coordinates (2h6k.pdb1.gz) 56 Kb Biological Unit Coordinates (2h6k.pdb2.gz) 55 Kb LPC: Ligand-Protein Contacts for 2H6K CSU: Contacts of Structural Units for 2H6K Likely Quarternary Molecular Structure file(s) for 2H6K Structure Factors (745 Kb) Retrieve 2H6K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2H6K from S2C, [Save to disk] Re-refined 2h6k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2H6K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2H6K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2H6K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2h6k_A] [2h6k_C] [2h6k_B] [2h6k] [2h6k_D] SWISS-PROT database: [P61964] Domain organization of [WDR5_HUMAN] by SWISSPFAM Domain found in 2H6K: [WD40 ] by SMART

Other resources with information on 2H6K

Community annotation for 2H6K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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