2H8W Rna Binding Protein date Jun 08, 2006
title Solution Structure Of Ribosomal Protein L11
authors D.Lee, J.D.Walsh, P.Yu, T.Choli-Papadopoulou, S.Krueger, D.Draper, Y.X.Wang
compound source
Molecule: 50s Ribosomal Protein L11
Chain: A
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Gene: Rplk, Rpl11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Structure of Free L11 and Functional Dynamics of L11 in Free, L11-rRNA(58 nt) Binary and L11-rRNA(58 nt)-thiostrepton Ternary Complexes., Lee D, Walsh JD, Yu P, Markus MA, Choli-Papadopoulou T, Schwieters CD, Krueger S, Draper DE, Wang YX, J Mol Biol. 2007 Apr 6;367(4):1007-22. Epub 2007 Jan 10. PMID:17292917
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (751 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2H8W
  • Retrieve 2H8W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H8W from S2C, [Save to disk]
  • View 2H8W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H8W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2H8W, from MSDmotif at EBI
  • Fold representative 2h8w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h8w_A] [2h8w]
  • SWISS-PROT database: [P36238]
  • Domain organization of [RL11_THETH] by SWISSPFAM
  • Domain found in 2H8W: [RL11 ] by SMART
  • Other resources with information on 2H8W
  • Community annotation for 2H8W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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