2HBS Oxygen Transport date May 06, 1997
title The High Resolution Crystal Structure Of Deoxyhemoglobin S
authors D.J.Harrington, K.Adachi, W.E.Royer Junior
compound source
Molecule: Hemoglobin S (Deoxy), Alpha Chain
Chain: A, C, E, G
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood
Cell: Red Blood Cells
Cellular_location: Cytoplasm

Molecule: Hemoglobin S (Deoxy), Beta Chain
Chain: B, D, F, H
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Blood
Tissue: Blood
Cell: Red Blood Cells
Cellular_location: Cytoplasm
symmetry Space Group: P 1 21 1
R_factor 0.165 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.344 185.681 52.933 90.00 92.74 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand HEM enzyme
note 2HBS (Molecule of the Month:pdb41)
related structures by homologous chain: 1NS6, 1Y2Z
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G
  • peroxidase activity


  • F, B, H, D
  • peroxidase activity


  • Primary referenceThe high resolution crystal structure of deoxyhemoglobin S., Harrington DJ, Adachi K, Royer WE Jr, J Mol Biol. 1997 Sep 26;272(3):398-407. PMID:9325099
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (2hbs.pdb1.gz) 99 Kb
  • Biological Unit Coordinates (2hbs.pdb2.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 2HBS
  • CSU: Contacts of Structural Units for 2HBS
  • Likely Quarternary Molecular Structure file(s) for 2HBS
  • Structure Factors (1158 Kb)
  • Retrieve 2HBS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HBS from S2C, [Save to disk]
  • Re-refined 2hbs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HBS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HBS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HBS, from MSDmotif at EBI
  • Genome occurence of 2HBS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2hbsa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2hbsb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d2hbsc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d2hbsd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d2hbse_, region E [Jmol] [rasmolscript] [script source]
        - Domain d2hbsf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d2hbsg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d2hbsh_, region H [Jmol] [rasmolscript] [script source]
  • Fold representative 2hbs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hbs_E] [2hbs_A] [2hbs_B] [2hbs_D] [2hbs_H] [2hbs_C] [2hbs_G] [2hbs] [2hbs_F]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Domain organization of [HBA_HUMAN] [HBB_HUMAN] by SWISSPFAM
  • Other resources with information on 2HBS
  • Community annotation for 2HBS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 2HBS from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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