2HCC Chemokine date Jul 03, 1998
title Solution Structure Of The Human Chemokine Hcc-2, Nmr, 30 Str
authors H.Sticht, S.E.Escher, K.Schweimer, W.G.Forssmann, P.Roesch, K.Ade
compound source
Molecule: Human Chemokine Hcc-2
Chain: A
Fragment: Residues 48-113 Of Hcc-2 Precursor
Synonym: Macrophage Inflammatory Protein 5 (Mip-5), Leukota
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
methodSolution NMR
related structures by homologous chain: 1G91
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the human CC chemokine 2: A monomeric representative of the CC chemokine subtype., Sticht H, Escher SE, Schweimer K, Forssmann WG, Rosch P, Adermann K, Biochemistry 1999 May 11;38(19):5995-6002. PMID:10320325
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (510 Kb) [Save to disk]
  • Biological Unit Coordinates (2hcc.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 2HCC
  • Original NMR restraints for 2HCC from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2HCC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HCC from S2C, [Save to disk]
    • View 2HCC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HCC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HCC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2hcc__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hcc] [2hcc_A]
  • SWISS-PROT database: [Q16663]
  • Domain organization of [CCL15_HUMAN] by SWISSPFAM
  • Domain found in 2HCC: [SCY ] by SMART
    • Other resources with information on 2HCC
  • Community annotation for 2HCC at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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