2HDE Transcription date Jun 20, 2006
title Solution Structure Of Human Sap18
authors S.A.Mccallum, J.P.Yin, B.Pan, W.J.Fairbrother
compound source
Molecule: Histone Deacetylase Complex Subunit Sap18
Chain: A
Fragment: Residues 6-149
Synonym: Sin3-Associated Polypeptide, 18 Kda, Sin3-Associat Polypeptide P18, 2hor0202;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sap18
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Ril-Codon Plus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • transcription corepressor ac...


    • Primary referenceStructure of SAP18: a ubiquitin fold in histone deacetylase complex assembly., McCallum SA, Bazan JF, Merchant M, Yin J, Pan B, de Sauvage FJ, Fairbrother WJ, Biochemistry. 2006 Oct 3;45(39):11974-82. PMID:17002296
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (800 Kb) [Save to disk]
  • Biological Unit Coordinates (2hde.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 2HDE
  • Original NMR restraints for 2HDE from PDB
  • Retrieve 2HDE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HDE from S2C, [Save to disk]
    • View 2HDE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HDE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HDE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hde_A] [2hde]
  • SWISS-PROT database: [O00422]
  • Belongs to the nuclear mrna exporter (mrna-e) family according to TCDB.
  • Domain organization of [SAP18_HUMAN] by SWISSPFAM
    • Other resources with information on 2HDE
  • Community annotation for 2HDE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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