2HHC Transferase date Jun 28, 2006
title Crystal Structure Of Fucosyltransferase Nodz From Bradyrhizo
authors K.Brzezinski, T.Stepkowski, S.Panjikar, G.Bujacz, M.Jaskolski
compound source
Molecule: Nodulation Fucosyltransferase Nodz
Chain: A
Synonym: Nodz
Ec: 2.4.1.-
Engineered: Yes
Organism_scientific: Bradyrhizobium Sp.
Organism_taxid: 133505
Strain: Wm9
Gene: Nodz
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codonplus(De3)Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 65 2 2
R_factor 0.182 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.200 124.200 96.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.54 Å
ligand PO4, TRS enzyme Transferase E.C.2.4.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution structure of NodZ fucosyltransferase involved in the biosynthesis of the nodulation factor., Brzezinski K, Stepkowski T, Panjikar S, Bujacz G, Jaskolski M, Acta Biochim Pol. 2007;54(3):537-49. Epub 2007 Aug 30. PMID:17762900
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (2hhc.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2HHC
  • CSU: Contacts of Structural Units for 2HHC
  • Likely Quarternary Molecular Structure file(s) for 2HHC
  • Structure Factors (329 Kb)
  • Retrieve 2HHC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HHC from S2C, [Save to disk]
  • Re-refined 2hhc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HHC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HHC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HHC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hhc] [2hhc_A]
  • SWISS-PROT database: [Q9AQ17]
  • Domain organization of [Q9AQ17_BRASW] by SWISSPFAM
  • Other resources with information on 2HHC
  • Community annotation for 2HHC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science