OCA Atlas for 2HIR

2HIR

Coagulation Inhibitor

date

Dec 19, 1988

title

Solution Structure Of Recombinant Hirudin And The Lys-47 (Ri Glu Mutant. A Nuclear Magnetic Resonance And Hybrid Distanc Geometry-Dynamical Simulated Annealing Study

authors

G.M.Clore, A.M.Gronenborn

compound

source

Molecule: Hirudin Variant-1
Chain: A
Engineered: Yes

Organism_scientific: Hirudo Medicinalis
Organism_common: Medicinal Leech
Organism_taxid: 6421

method

Solution NMR

related structures

by homologous chain: 1HIC, 3HTC

Gene
Ontology

Chain	Function	Process	Component
A	serine-type endopeptidase in...

Primary reference

Solution structure of recombinant hirudin and the Lys-47----Glu mutant: a nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing study., Folkers PJ, Clore GM, Driscoll PC, Dodt J, Kohler S, Gronenborn AM, Biochemistry 1989 Mar 21;28(6):2601-17. PMID:2567183

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (357 Kb) [Save to disk]

Biological Unit Coordinates (2hir.pdb1.gz) 12 Kb

CSU: Contacts of Structural Units for 2HIR

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 2HIR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2HIR from S2C, [Save to disk]

View 2HIR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HIR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2HIR, from MSDmotif at EBI

Genome occurence of 2HIR's fold from GeneCensus

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d2hir__, region [Jmol] [rasmolscript] [script source]

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hir_A] [2hir]

SWISS-PROT database: [P01050]

Domain organization of [HIRV1_HIRME] by SWISSPFAM

Other resources with information on 2HIR

Community annotation for 2HIR at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]