2HM2 Apoptosis date Jul 11, 2006
title Solution Structure Of Asc2
authors A.Natarajan, R.Ghose, J.M.Hill
compound source
Molecule: Pyrin-Only Protein 1
Chain: Q
Fragment: Pyrin Domain
Synonym: Asc2; Pyrin Domain Containing 1; Paad-Only Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pop1, Pydc1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-30
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
Q


Primary referenceStructure and dynamics of ASC2, a pyrin domain-only protein that regulates inflammatory signaling., Natarajan A, Ghose R, Hill JM, J Biol Chem. 2006 Oct 20;281(42):31863-75. Epub 2006 Aug 10. PMID:16905547
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (487 Kb) [Save to disk]
  • Biological Unit Coordinates (2hm2.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2HM2
  • Retrieve 2HM2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HM2 from S2C, [Save to disk]
    • View 2HM2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HM2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HM2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hm2] [2hm2_Q]
  • SWISS-PROT database: [Q8WXC3]
  • Domain organization of [PYDC1_HUMAN] by SWISSPFAM
  • Domain found in 2HM2: [PYRIN ] by SMART
    • Other resources with information on 2HM2
  • Community annotation for 2HM2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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