2HOX Lyase date Jul 17, 2006
title Alliinase From Allium Sativum (Garlic)
authors L.J.W.Shimon, A.Rabinkov, M.Wilcheck, D.Mirelman, F.Frolow
compound source
Molecule: Alliin Lyase 1
Chain: A, B, C, D
Fragment: Alliin Lyase 1
Synonym: Alliinase 1, Cysteine Sulphoxide Lyase 1
Ec: 4.4.1.4
Organism_scientific: Allium Sativum
Organism_common: Garlic
Organism_taxid: 4682
Tissue: Bulbs
symmetry Space Group: P 1 21 1
R_factor 0.167 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.665 126.892 102.664 90.00 97.30 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand BMA, CL, FUC, NAG, P1T, XYP enzyme Lyase E.C.4.4.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceTwo structures of alliinase from Alliium sativum L.: apo form and ternary complex with aminoacrylate reaction intermediate covalently bound to the PLP cofactor., Shimon LJ, Rabinkov A, Shin I, Miron T, Mirelman D, Wilchek M, Frolow F, J Mol Biol. 2007 Feb 16;366(2):611-25. Epub 2006 Nov 14. PMID:17174334
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (339 Kb) [Save to disk]
  • Biological Unit Coordinates (2hox.pdb1.gz) 169 Kb
  • Biological Unit Coordinates (2hox.pdb2.gz) 166 Kb
  • Biological Unit Coordinates (2hox.pdb3.gz) 330 Kb
  • LPC: Ligand-Protein Contacts for 2HOX
  • CSU: Contacts of Structural Units for 2HOX
  • Likely Quarternary Molecular Structure file(s) for 2HOX
  • Structure Factors (2443 Kb)
  • Retrieve 2HOX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HOX from S2C, [Save to disk]
  • Re-refined 2hox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HOX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HOX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HOX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hox_D] [2hox_A] [2hox_C] [2hox_B] [2hox]
  • SWISS-PROT database: [Q01594]
  • Domain organization of [ALLN1_ALLSA] by SWISSPFAM
  • Other resources with information on 2HOX
  • Community annotation for 2HOX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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