2HPC	Blood Clotting	date	Jul 17, 2006
title	Crystal Structure Of Fragment D From Human Fibrinogen Comple Gly-Pro-Arg-Pro-Amide.
authors	R.F.Doolittle, J.M.Kollman, A.Chen, L.Pandi
compound		source
Molecule: Fibrinogen Alpha Chain Chain: A, D, G, J		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Fibrinogen Beta Chain Chain: B, E, H, K		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Fibrinogen, Gamma Polypeptide Chain: C, F, I, L		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Gly-Pro-Arg-Pro-Amide Peptide Ligand Chain: M, N, O, P, Q, R, S, T Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized.
symmetry	Space Group: P 1 2 1	R_factor 0.275 R_Free 0.360
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.677 46.069 429.901 90.00 89.99 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	CA, NAG, NH2	enzyme
Gene Ontology	Chain Function Process Component A, J, D, G F, C, I, L K, E, B, H

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (452 Kb) [Save to disk] Biological Unit Coordinates (2hpc.pdb1.gz) 116 Kb Biological Unit Coordinates (2hpc.pdb2.gz) 115 Kb Biological Unit Coordinates (2hpc.pdb3.gz) 117 Kb Biological Unit Coordinates (2hpc.pdb4.gz) 116 Kb LPC: Ligand-Protein Contacts for 2HPC CSU: Contacts of Structural Units for 2HPC Likely Quarternary Molecular Structure file(s) for 2HPC Structure Factors (1032 Kb) Retrieve 2HPC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2HPC from S2C, [Save to disk] Re-refined 2hpc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2HPC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2HPC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2HPC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2hpc_M] [2hpc_Q] [2hpc_L] [2hpc_K] [2hpc_A] [2hpc_T] [2hpc_S] [2hpc_J] [2hpc_G] [2hpc] [2hpc_D] [2hpc_E] [2hpc_R] [2hpc_H] [2hpc_N] [2hpc_B] [2hpc_F] [2hpc_I] [2hpc_O] [2hpc_C] [2hpc_P] SWISS-PROT database: [P02671] [P02675] [P02679] Domain organization of [FIBA_HUMAN] [FIBB_HUMAN] [FIBG_HUMAN] by SWISSPFAM Domain found in 2HPC: [FBG ] by SMART

Other resources with information on 2HPC

Community annotation for 2HPC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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