2HQY Structural Genomics, Unknown Function date Jul 19, 2006
title Crystal Structure Of Conserved Protein Of Unknown Function F Bacteroides Thetaiotaomicron Vpi-5482
authors B.Nocek, M.Borovilos, J.Abdullah, A.Joachimiak, Midwest Center F Structural Genomics (Mcsg)
compound source
Molecule: Conserved Hypothetical Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Bacteroides Thetaiotaomicron
Organism_taxid: 226186
Strain: Vpi-5482
Gene: Bt_3689
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.468 81.879 138.449 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand COA enzyme
Gene BT
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (2hqy.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 2HQY
  • CSU: Contacts of Structural Units for 2HQY
  • Likely Quarternary Molecular Structure file(s) for 2HQY
  • Structure Factors (528 Kb)
  • Retrieve 2HQY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HQY from S2C, [Save to disk]
  • Re-refined 2hqy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2HQY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HQY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HQY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hqy_A] [2hqy] [2hqy_B]
  • SWISS-PROT database: [Q8A1H2]
  • Domain organization of [Q8A1H2_BACTN] by SWISSPFAM
    • Other resources with information on 2HQY
  • Community annotation for 2HQY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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