2HT8 Hydrolase date Jul 25, 2006
title N8 Neuraminidase In Complex With Oseltamivir
authors R.J.Russell, L.F.Haire, D.J.Stevens, P.J.Collins, Y.P.Lin, G.M.Bl A.J.Hay, S.J.Gamblin, J.J.Skehel
compound source
Molecule: Neuraminidase
Chain: A
Ec: 3.2.1.18
Organism_scientific: Influenza A Virus
Organism_taxid: 11320
symmetry Space Group: I 4
R_factor 0.252 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.430 90.430 109.710 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand G39 enzyme Hydrolase E.C.3.2.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of H5N1 avian influenza neuraminidase suggests new opportunities for drug design., Russell RJ, Haire LF, Stevens DJ, Collins PJ, Lin YP, Blackburn GM, Hay AJ, Gamblin SJ, Skehel JJ, Nature. 2006 Aug 16;. PMID:16915235
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (2ht8.pdb1.gz) 246 Kb
  • LPC: Ligand-Protein Contacts for 2HT8
  • CSU: Contacts of Structural Units for 2HT8
  • Likely Quarternary Molecular Structure file(s) for 2HT8
  • Structure Factors (323 Kb)
  • Retrieve 2HT8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HT8 from S2C, [Save to disk]
  • Re-refined 2ht8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HT8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HT8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2HT8, from MSDmotif at EBI
  • Fold representative 2ht8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ht8_A] [2ht8]
  • SWISS-PROT database: [Q07599]
  • Domain organization of [NRAM_I63A3] by SWISSPFAM
  • Other resources with information on 2HT8
  • Community annotation for 2HT8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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