2HWT Replication, Hydrolase date Aug 02, 2006
title Nmr Solution Structure Of The Master-Rep Protein Nuclease Do 95) From The Faba Bean Necrotic Yellows Virus
authors S.Vega-Rocha, B.Gronenborn, A.M.Gronenborn, R.Campos-Olivas
compound source
Molecule: Putative Replicase-Associated Protein
Chain: A
Fragment: Nuclease Domain (Residues 2-95)
Ec: 3.1.21.-
Engineered: Yes
Organism_scientific: Faba Bean Necrotic Yellows Virus
Organism_taxid: 59817
Gene: C2 Component 2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the endonuclease domain from the master replication initiator protein of the nanovirus faba bean necrotic yellows virus and comparison with the corresponding geminivirus and circovirus structures., Vega-Rocha S, Gronenborn B, Gronenborn AM, Campos-Olivas R, Biochemistry. 2007 May 29;46(21):6201-12. Epub 2007 May 2. PMID:17472345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (883 Kb) [Save to disk]
  • Biological Unit Coordinates (2hwt.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2HWT
  • Original NMR restraints for 2HWT from PDB
  • Retrieve 2HWT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HWT from S2C, [Save to disk]
  • View 2HWT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HWT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HWT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hwt] [2hwt_A]
  • SWISS-PROT database: [O39828]
  • Domain organization of [MREP_FBNY2] by SWISSPFAM
  • Other resources with information on 2HWT
  • Community annotation for 2HWT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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