2I13	Dna Binding Protein Dna	date	Aug 12, 2006
title	Aart, A Six Finger Zinc Finger Designed To Recognize Ann Tri
authors	N.C.Horton, D.J.Segal, M.Bhakta, J.W.Crotty, C.F.Barbas Iii
compound		source
Molecule: 5'-D(Cpapgpaptpgptpapgpgpgpapapapa Cpgpgpg)-3'; Chain: C, E Engineered: Yes		Synthetic: Yes Other_details: Solid Phase Synthesis By Phosphoramidite Che
Molecule: 5'-D(Gpcpcpcpgpgpgpcptptptptpcpcpc Aptpcpt)-3'; Chain: D, F Engineered: Yes		Synthetic: Yes Other_details: Solid Phase Synthesis By Phosphoramidite Che
Molecule: Aart Chain: A, B Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmal Fusion
symmetry	Space Group: P 1	R_factor 0.203 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.586 72.054 74.212 75.53 83.80 72.67
method	X-Ray Diffraction	resolution	1.96 Å
ligand	GOL, ZN	enzyme
Primary reference	Structure of Aart, a Designed Six-finger Zinc Finger Peptide, Bound to DNA., Segal DJ, Crotty JW, Bhakta MS, Barbas CF 3rd, Horton NC, J Mol Biol. 2006 Oct 20;363(2):405-21. Epub 2006 Aug 11. PMID:16963084

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (2i13.pdb1.gz) 47 Kb Biological Unit Coordinates (2i13.pdb2.gz) 46 Kb LPC: Ligand-Protein Contacts for 2I13 CSU: Contacts of Structural Units for 2I13 Likely Quarternary Molecular Structure file(s) for 2I13 Structure Factors (391 Kb) Retrieve 2I13 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2I13 from S2C, [Save to disk] Re-refined 2i13 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2I13 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2I13

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2I13, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2i13_D] [2i13] [2i13_A] [2i13_E] [2i13_B] [2i13_F] [2i13_C] SWISS-PROT database: [Q07230] Domain organization of [ZSCA2_MOUSE] by SWISSPFAM Domain found in 2I13: [ZnF_C2H2 ] by SMART

Other resources with information on 2I13

Community annotation for 2I13 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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