2I4Z	Transcription	date	Aug 23, 2006
title	Crystal Structure Of The Complex Between Ppargamma And The P Agonist Lt127 (Ureidofibrate Derivative). This Structure Ha Obtained From Crystals Soaked For 6 Hours.
authors	G.Pochetti, F.Mazza
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain (Lbd), Residues 223-504 Synonym: Ppar-Gamma Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg, Nr1c3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
symmetry	Space Group: C 1 2 1	R_factor 0.238 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.000 60.140 118.080 90.00 103.70 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	DRH BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Insights into the mechanism of partial agonism: crystal structures of the peroxisome proliferator-activated receptor gamma ligand-binding domain in the complex with two enantiomeric ligands., Pochetti G, Godio C, Mitro N, Caruso D, Galmozzi A, Scurati S, Loiodice F, Fracchiolla G, Tortorella P, Laghezza A, Lavecchia A, Novellino E, Mazza F, Crestani M, J Biol Chem. 2007 Apr 2;. PMID:17403688

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (2i4z.pdb1.gz) 93 Kb LPC: Ligand-Protein Contacts for 2I4Z CSU: Contacts of Structural Units for 2I4Z Likely Quarternary Molecular Structure file(s) for 2I4Z Structure Factors (246 Kb) Retrieve 2I4Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2I4Z from S2C, [Save to disk] Re-refined 2i4z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2I4Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2I4Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2I4Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2i4z_A] [2i4z] [2i4z_B] SWISS-PROT database: [P37231] Domain organization of [PPARG_HUMAN] by SWISSPFAM Domain found in 2I4Z: [HOLI ] by SMART

Other resources with information on 2I4Z

Community annotation for 2I4Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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