OCA Atlas for 2I5Y

2I5Y

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BIF, DPR, MPT, NAG, VLM

enzyme

Gene
Ontology

Chain	Function	Process	Component
P, G

Primary reference

Combinatorial optimization of a CD4-mimetic miniprotein and cocrystal structures with HIV-1 gp120 envelope glycoprotein., Stricher F, Huang CC, Descours A, Duquesnoy S, Combes O, Decker JM, Kwon YD, Lusso P, Shaw GM, Vita C, Kwong PD, Martin L, J Mol Biol. 2008 Oct 3;382(2):510-24. Epub 2008 Jul 1. PMID:18619974

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (257 Kb) [Save to disk]

Biological Unit Coordinates (2i5y.pdb1.gz) 129 Kb

Biological Unit Coordinates (2i5y.pdb2.gz) 126 Kb

LPC: Ligand-Protein Contacts for 2I5Y

CSU: Contacts of Structural Units for 2I5Y

Likely Quarternary Molecular Structure file(s) for 2I5Y

Structure Factors (1107 Kb)

Retrieve 2I5Y in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2I5Y from S2C, [Save to disk]

Re-refined 2i5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2I5Y in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2i5y] [2i5y_G] [2i5y_H] [2i5y_L] [2i5y_M] [2i5y_P] [2i5y_Q] [2i5y_R] [2i5y_S]

SWISS-PROT database: [P35961] [P01857]

Domains found in 2I5Y: [IG_like] [IGv ] by SMART

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