OCA Atlas for 2I9B

2I9B

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BMA, NAG, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, A, C, B
G, E, H, F

Primary reference

Structural basis of interaction between urokinase-type plasminogen activator and its receptor., Barinka C, Parry G, Callahan J, Shaw DE, Kuo A, Bdeir K, Cines DB, Mazar A, Lubkowski J, J Mol Biol. 2006 Oct 20;363(2):482-95. Epub 2006 Aug 26. PMID:16979660

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]

Biological Unit Coordinates (2i9b.pdb1.gz) 65 Kb

Biological Unit Coordinates (2i9b.pdb2.gz) 65 Kb

Biological Unit Coordinates (2i9b.pdb3.gz) 61 Kb

Biological Unit Coordinates (2i9b.pdb4.gz) 61 Kb

LPC: Ligand-Protein Contacts for 2I9B

CSU: Contacts of Structural Units for 2I9B

Likely Quarternary Molecular Structure file(s) for 2I9B

Structure Factors (742 Kb)

Retrieve 2I9B in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2I9B from S2C, [Save to disk]

Re-refined 2i9b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2I9B in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2i9b] [2i9b_A] [2i9b_B] [2i9b_C] [2i9b_D] [2i9b_E] [2i9b_F] [2i9b_G] [2i9b_H]

SWISS-PROT database: [Q03405] [P00749]

Domains found in 2I9B: [EGF] [KR] [LU ] by SMART

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