2IBD Structural Genomics, Unknown Function date Sep 11, 2006
title Crystal Structure Of Probable Transcriptional Regulatory Pro Rha5900
authors C.Chang, E.Evdokimova, O.Kagan, A.Savchenko, A.M.Edwards, A.Joach Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Possible Transcriptional Regulator
Chain: A, B
Engineered: Yes
 Organism_scientific: Rhodococcus Sp.
Organism_taxid: 101510
Strain: Rha1
Gene: Rha1_ro04598
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Derivatives
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet Derivatives
symmetry Space Group: C 2 2 21
R_factor 0.168 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.588 118.778 97.173 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand MG, MSE enzyme
Gene RHA1
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (2ibd.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 2IBD
  • CSU: Contacts of Structural Units for 2IBD
  • Likely Quarternary Molecular Structure file(s) for 2IBD
  • Structure Factors (1241 Kb)
  • Retrieve 2IBD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IBD from S2C, [Save to disk]
  • Re-refined 2ibd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2IBD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2IBD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IBD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ibd] [2ibd_B] [2ibd_A]
  • SWISS-PROT database: [Q0S7V2]
  • Domain organization of [Q0S7V2_RHOSR] by SWISSPFAM
    • Other resources with information on 2IBD
  • Community annotation for 2IBD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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