2ICY	Transferase	date	Sep 13, 2006
title	Crystal Structure Of A Putative Udp-Glucose Pyrophosphorylas Arabidopsis Thaliana With Bound Udp-Glucose
authors	J.G.Mccoy, G.E.Wesenberg, G.N.Phillips Jr., E.Bitto, C.A.Bingman For Eukaryotic Structural Genomics (Cesg)
compound		source
Molecule: Probable Utp-Glucose-1-Phosphate Uridylyltransfer Chain: A, B Synonym: Udp-Glucose Pyrophosphorylase 2, Udpgp 2, Ugpase 2 Ec: 2.7.7.9 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Gene: At3g03250, T17b22.6 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834 P(Rare2) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pvp-17
symmetry	Space Group: C 1 2 1	R_factor 0.183 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 188.008 59.712 89.762 90.00 100.32 90.00
method	X-Ray Diffraction, 2 Models	resolution	1.64 Å
ligand	DMS, U5P, UPG	enzyme	Transferase E.C.2.7.7.9 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure and Dynamics of UDP-Glucose Pyrophosphorylase from Arabidopsis thaliana with Bound UDP-Glucose and UTP., McCoy JG, Bitto E, Bingman CA, Wesenberg GE, Bannen RM, Kondrashov DA, Phillips GN Jr, J Mol Biol. 2007 Feb 23;366(3):830-41. Epub 2006 Nov 21. PMID:17178129

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (323 Kb) [Save to disk] Biological Unit Coordinates (2icy.pdb1.gz) 80 Kb Biological Unit Coordinates (2icy.pdb2.gz) 83 Kb LPC: Ligand-Protein Contacts for 2ICY CSU: Contacts of Structural Units for 2ICY Likely Quarternary Molecular Structure file(s) for 2ICY Structure Factors (2069 Kb) Retrieve 2ICY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ICY from S2C, [Save to disk]

View 2ICY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ICY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2icy] [2icy_A] [2icy_B] SWISS-PROT database: [Q9M9P3] Domain organization of [UGPA2_ARATH] by SWISSPFAM

Other resources with information on 2ICY

Community annotation for 2ICY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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