2IUA Transferase date May 30, 2006
title C. Trachomatis Lpxd
authors L.Buetow, T.K.Smith, A.Dawson, S.Fyffe, W.N.Hunter
compound source
Molecule: Udp-3-O-[3-Hydroxymyristoyl] Glucosamine N-Acyltr
Chain: A, B, C
Synonym: Lpxd
Ec: 2.3.1.-
Engineered: Yes
Organism_scientific: Chlamydia Trachomatis
Organism_taxid: 813
Variant: Serovar B
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet 15b (Novagen)
symmetry Space Group: P 41 21 2
R_factor 0.209 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.679 98.679 284.505 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MES, PLM, SO4 enzyme Transferase E.C.2.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure and reactivity of LpxD, the N-acyltransferase of lipid A biosynthesis., Buetow L, Smith TK, Dawson A, Fyffe S, Hunter WN, Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4321-6. Epub 2007 Mar 5. PMID:17360522
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (2iua.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 2IUA
  • CSU: Contacts of Structural Units for 2IUA
  • Likely Quarternary Molecular Structure file(s) for 2IUA
  • Structure Factors (536 Kb)
  • Retrieve 2IUA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IUA from S2C, [Save to disk]
  • Re-refined 2iua structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2IUA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2IUA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IUA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2iua_B] [2iua_A] [2iua] [2iua_C]
  • SWISS-PROT database: [P0CD76]
  • Domain organization of [LPXD_CHLTR] by SWISSPFAM
  • Other resources with information on 2IUA
  • Community annotation for 2IUA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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