2IW5	Oxidoreductase Transcription Regulator	date	Jun 26, 2006
title	Structural Basis For Corest-Dependent Demethylation Of Nucle The Human Lsd1 Histone Demethylase
authors	M.Yang, C.B.Gocke, X.Luo, D.Borek, D.R.Tomchick, M.Machius, Z.Otwi H.Yu
compound		source
Molecule: Lysine-Specific Histone Demethylase 1 Chain: A Fragment: Swirm Domain, Amine Oxidase Domain And Linker, Re 171-836; Synonym: Amine Oxidase Flavin-Containing Domain Protein 2, Hdac Complex Protein Bhc110; Ec: 1.-.-.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector: Pgex-6p1 Expression_system_plasmid: Mj23
Molecule: Rest Corepressor 1 Chain: B Fragment: Fragment Of Sant1, Linker Region And Sant2 Domain 286-482; Synonym: Protein Corest Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector: Pet-28 Expression_system_plasmid: Mj65
symmetry	Space Group: I 2 2 2	R_factor 0.203 R_Free 0.212
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.354 178.222 234.932 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.57 Å
ligand	CL, FAD, GOL, NH4	enzyme	Oxidoreductase E.C.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for CoREST-dependent demethylation of nucleosomes by the human LSD1 histone demethylase., Yang M, Gocke CB, Luo X, Borek D, Tomchick DR, Machius M, Otwinowski Z, Yu H, Mol Cell. 2006 Aug 4;23(3):377-87. PMID:16885027

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk] Biological Unit Coordinates (2iw5.pdb1.gz) 130 Kb LPC: Ligand-Protein Contacts for 2IW5 CSU: Contacts of Structural Units for 2IW5 Likely Quarternary Molecular Structure file(s) for 2IW5 Structure Factors (569 Kb) Retrieve 2IW5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2IW5 from S2C, [Save to disk] Re-refined 2iw5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2IW5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2IW5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2IW5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2iw5_A] [2iw5_B] [2iw5] SWISS-PROT database: [O60341] [Q9UKL0] Domain organization of [KDM1_HUMAN] [RCOR1_HUMAN] by SWISSPFAM Domain found in 2IW5: [SANT ] by SMART

Other resources with information on 2IW5

Community annotation for 2IW5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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